STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG11700.1Protein of unknown function. (773 aa)    
Predicted Functional Partners:
SHG11743.1
PPIC-type PPIASE domain-containing protein.
 
     0.882
SHG11782.1
Hydrogenase/urease accessory protein HupE.
 
     0.880
SHF59550.1
PPIC-type PPIASE domain-containing protein.
 
     0.776
SHF59591.1
Hydrogenase/urease accessory protein HupE.
 
     0.773
SHE72306.1
Hypothetical protein.
  
     0.704
SHG07656.1
Hypothetical protein.
  
     0.704
SHF09254.1
Parallel beta-helix repeat-containing protein.
  
     0.513
SHE71648.1
Arylsulfatase.
  
     0.464
SHG11660.1
Protein of unknown function.
 
    
0.441
SHE71472.1
Uncharacterized conserved protein.
  
     0.417
Your Current Organism:
Microbulbifer donghaiensis
NCBI taxonomy Id: 494016
Other names: CGMCC 1.7063, JCM 15145, M. donghaiensis, Microbulbifer donghaiensis Wang et al. 2009, Microbulbifer sp. CN85, strain CN85
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.