Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHE90129.1 | SHG13230.1 | SAMN04487965_0907 | SAMN04487965_3362 | Semialdehyde dehydrogenase, dimerisation domain. | Hypothetical protein. | 0.499 |
SHE90129.1 | asd | SAMN04487965_0907 | SAMN04487965_0908 | Semialdehyde dehydrogenase, dimerisation domain. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.966 |
SHF74875.1 | SHG13230.1 | SAMN04487965_2606 | SAMN04487965_3362 | EF-P beta-lysylation protein EpmB. | Hypothetical protein. | 0.534 |
SHF74875.1 | efp | SAMN04487965_2606 | SAMN04487965_2607 | EF-P beta-lysylation protein EpmB. | Elongation factor P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family. | 0.855 |
SHG13200.1 | SHG13230.1 | SAMN04487965_3361 | SAMN04487965_3362 | Hypothetical protein. | Hypothetical protein. | 0.550 |
SHG13200.1 | SHG13255.1 | SAMN04487965_3361 | SAMN04487965_3363 | Hypothetical protein. | 5'-3' exonuclease. | 0.422 |
SHG13200.1 | pdxB | SAMN04487965_3361 | SAMN04487965_3364 | Hypothetical protein. | Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | 0.455 |
SHG13230.1 | SHE90129.1 | SAMN04487965_3362 | SAMN04487965_0907 | Hypothetical protein. | Semialdehyde dehydrogenase, dimerisation domain. | 0.499 |
SHG13230.1 | SHF74875.1 | SAMN04487965_3362 | SAMN04487965_2606 | Hypothetical protein. | EF-P beta-lysylation protein EpmB. | 0.534 |
SHG13230.1 | SHG13200.1 | SAMN04487965_3362 | SAMN04487965_3361 | Hypothetical protein. | Hypothetical protein. | 0.550 |
SHG13230.1 | SHG13255.1 | SAMN04487965_3362 | SAMN04487965_3363 | Hypothetical protein. | 5'-3' exonuclease. | 0.801 |
SHG13230.1 | SHG13315.1 | SAMN04487965_3362 | SAMN04487965_3365 | Hypothetical protein. | Predicted polyphosphate-or ATP-dependent NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.801 |
SHG13230.1 | SHG13340.1 | SAMN04487965_3362 | SAMN04487965_3366 | Hypothetical protein. | 23S rRNA (cytosine1962-C5)-methyltransferase; Belongs to the methyltransferase superfamily. | 0.577 |
SHG13230.1 | asd | SAMN04487965_3362 | SAMN04487965_0908 | Hypothetical protein. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.499 |
SHG13230.1 | ectA | SAMN04487965_3362 | SAMN04487965_1496 | Hypothetical protein. | L-2,4-diaminobutyric acid acetyltransferase; Catalyzes the acetylation of L-2,4-diaminobutyrate (DABA) to gamma-N-acetyl-alpha,gamma-diaminobutyric acid (ADABA) with acetyl coenzyme A. | 0.499 |
SHG13230.1 | efp | SAMN04487965_3362 | SAMN04487965_2607 | Hypothetical protein. | Elongation factor P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family. | 0.499 |
SHG13230.1 | pdxB | SAMN04487965_3362 | SAMN04487965_3364 | Hypothetical protein. | Erythronate-4-phosphate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | 0.865 |
SHG13255.1 | SHG13200.1 | SAMN04487965_3363 | SAMN04487965_3361 | 5'-3' exonuclease. | Hypothetical protein. | 0.422 |
SHG13255.1 | SHG13230.1 | SAMN04487965_3363 | SAMN04487965_3362 | 5'-3' exonuclease. | Hypothetical protein. | 0.801 |
SHG13255.1 | SHG13315.1 | SAMN04487965_3363 | SAMN04487965_3365 | 5'-3' exonuclease. | Predicted polyphosphate-or ATP-dependent NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.795 |
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