STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAB42748.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)    
Predicted Functional Partners:
OAB42762.1
Hydrolase TatD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.826
OAB34013.1
Ribosome biogenesis GTPase YqeH; In Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.647
ppnK
NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
     0.617
argS
Peptidase S8; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.604
rpoE
DNA-directed RNA polymerase subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
 
     0.571
OAB42929.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.501
OAB45533.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.499
OAB42749.1
AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.491
OAB45918.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.431
OAB45443.1
Sodium ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.430
Your Current Organism:
Paenibacillus glacialis
NCBI taxonomy Id: 494026
Other names: DSM 22343, NCCB 100252, P. glacialis, Paenibacillus glacialis Kishore et al. 2010, Paenibacillus sp. KFC91, strain KFC91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.