STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLE1_2Protein gle1. (283 aa)    
Predicted Functional Partners:
RAE1
Protein rae1.
   
 0.957
NUP155
Nuclear pore complex protein nup155.
   
 0.944
A4A49_41393
C2H2-type domain-containing protein.
    
 0.934
A4A49_38833
C2H2-type domain-containing protein.
    
 0.934
NUP54
Nuclear pore complex protein nup54.
   
 0.926
SEH1
Protein seh1; Belongs to the WD repeat SEC13 family.
    
 0.880
NUP205
Nuclear pore complex protein nup205.
    
 0.872
NUP93A
Nuclear pore protein.
   
 0.865
RH38_1
Dead-box atp-dependent rna helicase 38.
    
 
 0.826
RH38_0
Dead-box atp-dependent rna helicase 38.
    
 
 0.826
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.