STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RECGAtp-dependent dna helicase-like recg, chloroplastic. (1001 aa)    
Predicted Functional Partners:
A4A49_25194
Sas10 domain-containing protein.
   
 0.986
A4A49_05567
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.966
RRP5
Rrna biogenesis protein rrp5.
   
 0.962
A4A49_56371
Uncharacterized protein.
   
 0.959
A4A49_12378
Uncharacterized protein.
   
 0.959
A4A49_20228
Uncharacterized protein.
   
 
 0.908
A4A49_08167
WD_REPEATS_REGION domain-containing protein.
   
 
 0.908
RH13
Dead-box atp-dependent rna helicase 13.
   
 0.905
A4A49_30867
Uncharacterized protein.
   
 0.900
RPS1_1
30s ribosomal protein s1, chloroplastic.
  
 0.890
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
Server load: medium (72%) [HD]