STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGA1_0Transcription factor tga1. (363 aa)    
Predicted Functional Partners:
NPR1
Regulatory protein npr1.
    
 0.847
NPR3_0
Regulatory protein npr3.
    
 0.701
NPR3_1
Regulatory protein npr3.
    
 0.684
NPR5_2
Regulatory protein npr5.
    
 0.665
NPR5_1
Regulatory protein npr5.
    
 0.665
NPR5_0
Regulatory protein npr5.
    
 0.665
LBD6_2
Lob domain-containing protein 6.
  
     0.523
SP1L1_1
Protein spiral1-like 1.
  
   
 0.517
A4A49_06544
Glucan endo-1,3-beta-glucosidase 12.
  
     0.516
SP1L5
Protein spiral1-like 5.
  
     0.516
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.