STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRN2Protein tornado 2; Belongs to the tetraspanin (TM4SF) family. (271 aa)    
Predicted Functional Partners:
A4A49_43692
Uncharacterized protein.
  
     0.500
TRN1_2
Protein tornado 1.
      
 0.497
A4A49_00589
Uncharacterized protein.
  
     0.489
SP1L1_1
Protein spiral1-like 1.
  
   
 0.485
LBD12_1
Lob domain-containing protein 12.
  
     0.471
OSI_1
DNA helicase; Belongs to the MCM family.
      
 0.470
A4A49_28849
Uncharacterized protein.
  
     0.470
UNE12_1
Transcription factor une12.
  
     0.462
DYAD
Protein dyad.
      
 0.461
ESP1
Separase.
      
 0.459
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.