STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A4A49_31433Uncharacterized protein. (612 aa)    
Predicted Functional Partners:
A4A49_29398
Uncharacterized protein.
  
 
   0.514
SYD_0
Chromatin structure-remodeling complex protein syd.
   
 0.505
SYD_1
Chromatin structure-remodeling complex protein syd.
   
 0.505
SYD_2
Chromatin structure-remodeling complex protein syd.
   
 0.505
A4A49_16188
WD_REPEATS_REGION domain-containing protein.
    
 0.495
A4A49_25669
Serinethreonine-protein kinase atg1t; Belongs to the protein kinase superfamily.
    
 0.491
RBL
Protein rbl.
    
 0.482
A4A49_02272
Uncharacterized protein.
  
     0.482
A4A49_23080
Uncharacterized protein.
  
     0.481
ATXR3
Histone-lysine n-methyltransferase atxr3.
  
 0.480
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.