A4A49_20546 protein (Nicotiana attenuata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A4A49_20546

Uncharacterized protein. (196 aa)

Predicted Functional Partners:

A4A49_31169

0.493

A4A49_28508

0.493

A4A49_03398

0.484

A4A49_01492

0.482

A4A49_03397

0.480

A4A49_40502

0.479

TIC

0.469

BKI1_1

0.453

A4A49_24853

0.447

DEF_0

0.447

Your Current Organism:

Nicotiana attenuata

NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A4A49_01492	A4A49_20546	A0A1J6ITX8	A0A1J6II36	Uncharacterized protein.	Uncharacterized protein.	0.482
A4A49_03397	A4A49_20546	A0A314L3N5	A0A1J6II36	Uncharacterized protein.	Uncharacterized protein.	0.480
A4A49_03397	TIC	A0A314L3N5	A0A1J6KDR4	Uncharacterized protein.	Protein time for coffee.	0.403
A4A49_03398	A4A49_20546	A0A314L2D3	A0A1J6II36	Uncharacterized protein.	Uncharacterized protein.	0.484
A4A49_20546	A4A49_01492	A0A1J6II36	A0A1J6ITX8	Uncharacterized protein.	Uncharacterized protein.	0.482
A4A49_20546	A4A49_03397	A0A1J6II36	A0A314L3N5	Uncharacterized protein.	Uncharacterized protein.	0.480
A4A49_20546	A4A49_03398	A0A1J6II36	A0A314L2D3	Uncharacterized protein.	Uncharacterized protein.	0.484
A4A49_20546	A4A49_24853	A0A1J6II36	A0A314KUX7	Uncharacterized protein.	Uncharacterized protein.	0.447
A4A49_20546	A4A49_28508	A0A1J6II36	A0A314KL24	Uncharacterized protein.	Uncharacterized protein.	0.493
A4A49_20546	A4A49_31169	A0A1J6II36	A0A1J6I799	Uncharacterized protein.	Uncharacterized protein.	0.493
A4A49_20546	A4A49_40502	A0A1J6II36	A0A1J6KEE1	Uncharacterized protein.	Uncharacterized protein.	0.479
A4A49_20546	BKI1_1	A0A1J6II36	A0A1J6IIG6	Uncharacterized protein.	Bri1 kinase inhibitor 1.	0.453
A4A49_20546	DEF_0	A0A1J6II36	A0A314LDH2	Uncharacterized protein.	Defensin-like protein; Belongs to the DEFL family.	0.447
A4A49_20546	TIC	A0A1J6II36	A0A1J6KDR4	Uncharacterized protein.	Protein time for coffee.	0.469
A4A49_24853	A4A49_20546	A0A314KUX7	A0A1J6II36	Uncharacterized protein.	Uncharacterized protein.	0.447
A4A49_24853	DEF_0	A0A314KUX7	A0A314LDH2	Uncharacterized protein.	Defensin-like protein; Belongs to the DEFL family.	0.439
A4A49_28508	A4A49_20546	A0A314KL24	A0A1J6II36	Uncharacterized protein.	Uncharacterized protein.	0.493
A4A49_31169	A4A49_20546	A0A1J6I799	A0A1J6II36	Uncharacterized protein.	Uncharacterized protein.	0.493
A4A49_40502	A4A49_20546	A0A1J6KEE1	A0A1J6II36	Uncharacterized protein.	Uncharacterized protein.	0.479
BKI1_1	A4A49_20546	A0A1J6IIG6	A0A1J6II36	Bri1 kinase inhibitor 1.	Uncharacterized protein.	0.453