STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHR25_0Protein chromatin remodeling 25. (169 aa)    
Predicted Functional Partners:
MUS81
Crossover junction endonuclease mus81.
   
 0.752
RAD51
DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination; Belongs to the RecA family. RAD51 subfamily.
  
 
 0.706
RAD51C
Dna repair protein rad51-like 3.
  
 
 0.703
EXO1_1
Exonuclease 1.
   
 0.690
RECQL4B
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 
 0.687
ARP5
Actin-related protein 5; Belongs to the actin family.
    
 0.678
HMGB9
High mobility group b protein 9.
   
 0.677
HMGB15
High mobility group b protein 15.
   
 0.677
HMGB10
High mobility group b protein 10.
   
 0.677
A4A49_29178
Uncharacterized protein.
   
 0.677
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.