STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCB1_0Long chain base biosynthesis protein 1. (486 aa)    
Predicted Functional Partners:
LCB2A
Long chain base biosynthesis protein 2a.
  
0.998
TSC10A
3-dehydrosphinganine reductase tsc10a.
     
 0.983
LCB1_1
Long chain base biosynthesis protein 1.
  
  
 
0.900
AGT1_1
Serine--glyoxylate aminotransferase.
    
 0.857
AGT1_0
Serine--glyoxylate aminotransferase.
    
 0.857
A4A49_18797
Uncharacterized protein.
    
 
 0.854
A4A49_62874
Uncharacterized protein.
    
 
 0.854
A4A49_16782
Uncharacterized protein.
    
 
 0.854
BIO2
Biotin synthase.
  
  
 0.847
OMR1_2
Threonine dehydratase.
   
 0.835
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.