A4A49_61353 protein (Nicotiana attenuata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A4A49_61353

RRM domain-containing protein. (255 aa)

Predicted Functional Partners:

A4A49_20228

0.967

A4A49_05567

0.966

RH32

0.965

RH36

0.962

A4A49_32513

0.961

A4A49_28062

0.953

A4A49_08294

0.953

A4A49_27578

0.953

A4A49_34618

0.946

A4A49_00869

0.940

Your Current Organism:

Nicotiana attenuata

NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A4A49_00869	A4A49_05567	A0A1J6JNK2	A0A1J6ILW0	Putative pre-mrna-splicing factor atp-dependent rna helicase deah2.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.890
A4A49_00869	A4A49_20228	A0A1J6JNK2	A0A1J6I8P7	Putative pre-mrna-splicing factor atp-dependent rna helicase deah2.	Uncharacterized protein.	0.964
A4A49_00869	A4A49_32513	A0A1J6JNK2	A0A1J6J9A4	Putative pre-mrna-splicing factor atp-dependent rna helicase deah2.	NUC153 domain-containing protein.	0.912
A4A49_00869	A4A49_34618	A0A1J6JNK2	A0A314KKY9	Putative pre-mrna-splicing factor atp-dependent rna helicase deah2.	Uncharacterized protein.	0.904
A4A49_00869	A4A49_61353	A0A1J6JNK2	A0A1J6ILJ7	Putative pre-mrna-splicing factor atp-dependent rna helicase deah2.	RRM domain-containing protein.	0.940
A4A49_00869	RH32	A0A1J6JNK2	A0A314KI42	Putative pre-mrna-splicing factor atp-dependent rna helicase deah2.	RNA helicase.	0.824
A4A49_00869	RH36	A0A1J6JNK2	A0A314LC56	Putative pre-mrna-splicing factor atp-dependent rna helicase deah2.	Dead-box atp-dependent rna helicase 36; Belongs to the DEAD box helicase family.	0.815
A4A49_05567	A4A49_00869	A0A1J6ILW0	A0A1J6JNK2	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Putative pre-mrna-splicing factor atp-dependent rna helicase deah2.	0.890
A4A49_05567	A4A49_08294	A0A1J6ILW0	A0A1J6JBY7	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.982
A4A49_05567	A4A49_20228	A0A1J6ILW0	A0A1J6I8P7	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.998
A4A49_05567	A4A49_27578	A0A1J6ILW0	A0A314KL12	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.982
A4A49_05567	A4A49_28062	A0A1J6ILW0	A0A1J6ITW5	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.982
A4A49_05567	A4A49_32513	A0A1J6ILW0	A0A1J6J9A4	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	NUC153 domain-containing protein.	0.982
A4A49_05567	A4A49_34618	A0A1J6ILW0	A0A314KKY9	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.996
A4A49_05567	A4A49_61353	A0A1J6ILW0	A0A1J6ILJ7	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	RRM domain-containing protein.	0.966
A4A49_05567	RH32	A0A1J6ILW0	A0A314KI42	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	RNA helicase.	0.928
A4A49_05567	RH36	A0A1J6ILW0	A0A314LC56	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Dead-box atp-dependent rna helicase 36; Belongs to the DEAD box helicase family.	0.948
A4A49_08294	A4A49_05567	A0A1J6JBY7	A0A1J6ILW0	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.982
A4A49_08294	A4A49_20228	A0A1J6JBY7	A0A1J6I8P7	Uncharacterized protein.	Uncharacterized protein.	0.924
A4A49_08294	A4A49_32513	A0A1J6JBY7	A0A1J6J9A4	Uncharacterized protein.	NUC153 domain-containing protein.	0.459