Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZED1_1Non-functional kinase zed1. (359 aa)    
Predicted Functional Partners:
RPP13L4
Disease resistance rpp13-like protein 4; Belongs to the disease resistance NB-LRR family.
    
 
 0.905
APK2B_0
Protein kinase 2b, chloroplastic; Belongs to the protein kinase superfamily.
    
   0.501
APK2B_1
Protein kinase 2b, chloroplastic; Belongs to the protein kinase superfamily.
    
   0.501
APK2B_2
Protein kinase 2b, chloroplastic; Belongs to the protein kinase superfamily.
    
   0.501
A4A49_25198
Uncharacterized protein.
      
 0.422
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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