STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A4A49_26051Uncharacterized protein. (159 aa)    
Predicted Functional Partners:
A4A49_17589
Serinethreonine-protein kinase atr; Belongs to the PI3/PI4-kinase family.
    
 0.508
TAF10
Transcription initiation factor tfiid subunit 10.
    
  0.479
A4A49_41351
Uncharacterized protein.
  
     0.474
A4A49_10896
Uncharacterized protein.
  
     0.469
TAF5_1
Transcription initiation factor tfiid subunit 5.
    
 0.463
TAF9
Transcription initiation factor tfiid subunit 9.
    
  0.449
A4A49_25870
Uncharacterized protein.
  
     0.437
A4A49_17479
Uncharacterized protein.
  
     0.429
UBP22_1
Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.
    
 0.427
A4A49_42567
Uncharacterized protein.
  
     0.427
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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