STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UVH1Dna repair endonuclease uvh1. (952 aa)    
Predicted Functional Partners:
ERCC1
Dna excision repair protein ercc-1.
   
 0.990
A4A49_05733
Uncharacterized protein.
    
 0.975
A4A49_27678
DUF1767 domain-containing protein.
    
 0.960
MUS81
Crossover junction endonuclease mus81.
    
 0.958
TOP3A_0
Dna topoisomerase 3-alpha.
    
 0.946
A4A49_42777
CCHC-type domain-containing protein.
    
 0.946
A4A49_36461
Uncharacterized protein.
  
 0.934
A4A49_27148
Uncharacterized protein.
  
 0.934
RECQL4B
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
   
 0.927
UVH3
Dna repair protein uvh3.
   
 0.913
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.