CHIP_2 protein (Nicotiana attenuata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CHIP_2

E3 ubiquitin-protein ligase chip. (277 aa)

Predicted Functional Partners:

CHIP_1

0.901

CHIP_0

0.900

NBR1_0

0.705

NBR1_1

0.705

HSP70-17

0.700

UBI3_1

0.606

UBI3_2

0.606

PUB1_2

0.604

ATG7

0.594

A4A49_15206

0.572

Your Current Organism:

Nicotiana attenuata

NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A4A49_15206	ATG7	A0A1J6HZ31	A0A314KM41	Ataxin-3-like protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.495
A4A49_15206	CHIP_0	A0A1J6HZ31	A0A1J6KD51	Ataxin-3-like protein.	E3 ubiquitin-protein ligase chip.	0.572
A4A49_15206	CHIP_1	A0A1J6HZ31	A0A1J6I3W7	Ataxin-3-like protein.	E3 ubiquitin-protein ligase chip.	0.572
A4A49_15206	CHIP_2	A0A1J6HZ31	A0A1J6IXG4	Ataxin-3-like protein.	E3 ubiquitin-protein ligase chip.	0.572
A4A49_15206	PUB1_2	A0A1J6HZ31	A0A314L8F4	Ataxin-3-like protein.	Putative ubiquitin conjugation factor e4.	0.742
A4A49_15206	UBI3_1	A0A1J6HZ31	A0A1J6IMQ7	Ataxin-3-like protein.	Ubiquitin-40s ribosomal protein s27a.	0.934
A4A49_15206	UBI3_2	A0A1J6HZ31	A0A1J6IVZ6	Ataxin-3-like protein.	Ubiquitin-40s ribosomal protein s27a.	0.934
ATG7	A4A49_15206	A0A314KM41	A0A1J6HZ31	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Ataxin-3-like protein.	0.495
ATG7	CHIP_0	A0A314KM41	A0A1J6KD51	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	E3 ubiquitin-protein ligase chip.	0.594
ATG7	CHIP_1	A0A314KM41	A0A1J6I3W7	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	E3 ubiquitin-protein ligase chip.	0.594
ATG7	CHIP_2	A0A314KM41	A0A1J6IXG4	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	E3 ubiquitin-protein ligase chip.	0.594
ATG7	HSP70-17	A0A314KM41	A0A314KRG5	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Heat shock 70 kDa protein 17.	0.467
ATG7	NBR1_0	A0A314KM41	A0A1J6IWN2	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Protein nbr1-like protein.	0.751
ATG7	NBR1_1	A0A314KM41	A0A1J6JCN5	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Protein nbr1-like protein.	0.751
ATG7	PUB1_2	A0A314KM41	A0A314L8F4	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Putative ubiquitin conjugation factor e4.	0.691
ATG7	UBI3_1	A0A314KM41	A0A1J6IMQ7	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Ubiquitin-40s ribosomal protein s27a.	0.754
ATG7	UBI3_2	A0A314KM41	A0A1J6IVZ6	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Ubiquitin-40s ribosomal protein s27a.	0.754
CHIP_0	A4A49_15206	A0A1J6KD51	A0A1J6HZ31	E3 ubiquitin-protein ligase chip.	Ataxin-3-like protein.	0.572
CHIP_0	ATG7	A0A1J6KD51	A0A314KM41	E3 ubiquitin-protein ligase chip.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.594
CHIP_0	CHIP_1	A0A1J6KD51	A0A1J6I3W7	E3 ubiquitin-protein ligase chip.	E3 ubiquitin-protein ligase chip.	0.900