STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A4A49_52273Uncharacterized protein. (110 aa)    
Predicted Functional Partners:
RECQL4B
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
    
 0.821
RPA2B
Replication protein a 32 kDa subunit b.
   
 0.633
RPA2A
Replication protein a 32 kDa subunit a.
   
 0.633
ATR
Serinethreonine-protein kinase atr; Belongs to the PI3/PI4-kinase family.
    
 0.624
MCM5
DNA helicase; Belongs to the MCM family.
   
 0.591
DCL4_1
Endoribonuclease dicer-like 4.
    
 0.543
MCM4
DNA helicase; Belongs to the MCM family.
   
 0.536
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.495
A4A49_52257
PCNA_N domain-containing protein.
   
 0.495
A4A49_27678
DUF1767 domain-containing protein.
    
 0.484
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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