STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MED35C_0Pre-mrna-processing protein 40c. (687 aa)    
Predicted Functional Partners:
PRP38
Pre-mrna-splicing factor 38.
   
 0.961
A4A49_16491
MFAP1 domain-containing protein.
   
 0.957
A4A49_54611
Uncharacterized protein.
   
 0.957
RH45
Dead-box atp-dependent rna helicase 45.
   
 0.939
A4A49_07085
U1-type domain-containing protein.
    
  0.932
A4A49_25857
Uncharacterized protein.
    
  0.932
A4A49_01216
TOG domain-containing protein.
   
 
 0.901
A4A49_28423
PWI domain-containing protein.
   
 0.900
A4A49_00824
U2 small nuclear ribonucleoprotein a.
   
 
 0.882
ATO
Splicing factor sf3a60-like protein.
   
   0.882
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.