STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A4A49_39337SCAPER_N domain-containing protein. (1647 aa)    
Predicted Functional Partners:
OVA2
Isoleucine--trna ligase, chloroplasticmitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.581
MIP2
Mag2-interacting protein 2.
      
 0.569
RUAP_4
Rubisco-associated protein.
  
     0.510
RUAP_3
Rubisco-associated protein.
  
     0.502
A4A49_03978
Isoleucine--trna ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.499
A4A49_19612
Uncharacterized protein.
  
     0.497
PRU1
Major allergen pru ar 1; Belongs to the BetVI family.
  
     0.495
CHUP1_5
Protein chup1, chloroplastic.
  
     0.491
ZAT2
Zinc finger protein zat2.
  
     0.490
RUAP_2
Rubisco-associated protein; Belongs to the glycosyl hydrolase 18 family.
  
     0.489
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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