STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A4A49_62205Uncharacterized protein. (160 aa)    
Predicted Functional Partners:
UPL4
E3 ubiquitin-protein ligase upl4.
   
 
 0.546
UPL3_1
E3 ubiquitin-protein ligase upl3.
   
 
 0.531
UPL3_0
E3 ubiquitin-protein ligase upl3.
   
 
 0.531
UBI3_1
Ubiquitin-40s ribosomal protein s27a.
    
 0.502
UBI3_2
Ubiquitin-40s ribosomal protein s27a.
    
 0.502
RBX1A_2
Ring-box protein 1a.
    
 0.418
RBX1A_1
Ring-box protein 1a.
    
 0.418
RBX1A_0
Ring-box protein 1a.
    
 0.418
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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