A4A49_18063 protein (Nicotiana attenuata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A4A49_18063

Putative lrr receptor-like serinethreonine-protein kinase. (176 aa)

Predicted Functional Partners:

BAK1_2

0.521

BAK1_0

0.521

A4A49_14061

0.510

ZFP4_3

0.504

TGA21_2

0.504

A4A49_10000

0.486

A4A49_04729

0.486

ZFP7

0.479

A4A49_25637

0.478

LBD1_3

0.477

Your Current Organism:

Nicotiana attenuata

NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A4A49_04729	A4A49_18063	A0A314KZ47	A0A314KKZ3	Zinc_ribbon_12 domain-containing protein.	Putative lrr receptor-like serinethreonine-protein kinase.	0.486
A4A49_04729	ZFP4_3	A0A314KZ47	A0A1J6HWX4	Zinc_ribbon_12 domain-containing protein.	Zinc finger protein 4.	0.425
A4A49_04729	ZFP7	A0A314KZ47	A0A1J6HWF1	Zinc_ribbon_12 domain-containing protein.	Zinc finger protein 7.	0.412
A4A49_10000	A4A49_18063	A0A1J6ISV1	A0A314KKZ3	Protein phosphatase 2c and cyclic nucleotide-bindingkinase domain-containing protein.	Putative lrr receptor-like serinethreonine-protein kinase.	0.486
A4A49_14061	A4A49_18063	A0A314KVL2	A0A314KKZ3	Uncharacterized protein.	Putative lrr receptor-like serinethreonine-protein kinase.	0.510
A4A49_14061	A4A49_25637	A0A314KVL2	A0A314KSC3	Uncharacterized protein.	PB1 domain-containing protein.	0.411
A4A49_14061	LBD1_3	A0A314KVL2	A0A1J6JS37	Uncharacterized protein.	Lob domain-containing protein 1.	0.511
A4A49_14061	TGA21_2	A0A314KVL2	A0A1J6IKU2	Uncharacterized protein.	Tgacg-sequence-specific dna-binding protein tga-2.1.	0.434
A4A49_14061	ZFP4_3	A0A314KVL2	A0A1J6HWX4	Uncharacterized protein.	Zinc finger protein 4.	0.491
A4A49_14061	ZFP7	A0A314KVL2	A0A1J6HWF1	Uncharacterized protein.	Zinc finger protein 7.	0.482
A4A49_18063	A4A49_04729	A0A314KKZ3	A0A314KZ47	Putative lrr receptor-like serinethreonine-protein kinase.	Zinc_ribbon_12 domain-containing protein.	0.486
A4A49_18063	A4A49_10000	A0A314KKZ3	A0A1J6ISV1	Putative lrr receptor-like serinethreonine-protein kinase.	Protein phosphatase 2c and cyclic nucleotide-bindingkinase domain-containing protein.	0.486
A4A49_18063	A4A49_14061	A0A314KKZ3	A0A314KVL2	Putative lrr receptor-like serinethreonine-protein kinase.	Uncharacterized protein.	0.510
A4A49_18063	A4A49_25637	A0A314KKZ3	A0A314KSC3	Putative lrr receptor-like serinethreonine-protein kinase.	PB1 domain-containing protein.	0.478
A4A49_18063	BAK1_0	A0A314KKZ3	A0A314LI48	Putative lrr receptor-like serinethreonine-protein kinase.	Brassinosteroid insensitive 1-associated receptor kinase 1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.521
A4A49_18063	BAK1_2	A0A314KKZ3	A0A1J6KCV1	Putative lrr receptor-like serinethreonine-protein kinase.	Brassinosteroid insensitive 1-associated receptor kinase 1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.	0.521
A4A49_18063	LBD1_3	A0A314KKZ3	A0A1J6JS37	Putative lrr receptor-like serinethreonine-protein kinase.	Lob domain-containing protein 1.	0.477
A4A49_18063	TGA21_2	A0A314KKZ3	A0A1J6IKU2	Putative lrr receptor-like serinethreonine-protein kinase.	Tgacg-sequence-specific dna-binding protein tga-2.1.	0.504
A4A49_18063	ZFP4_3	A0A314KKZ3	A0A1J6HWX4	Putative lrr receptor-like serinethreonine-protein kinase.	Zinc finger protein 4.	0.504
A4A49_18063	ZFP7	A0A314KKZ3	A0A1J6HWF1	Putative lrr receptor-like serinethreonine-protein kinase.	Zinc finger protein 7.	0.479