STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A4A49_29229Receptor-like serine/threonine-protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (844 aa)    
Predicted Functional Partners:
CYC07_0
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.864
A4A49_16065
Elongation factor 1-delta 1.
   
 0.852
A4A49_02992
Uncharacterized protein.
   
 0.852
A4A49_22322
Elongation factor 1-beta; Belongs to the EF-1-beta/EF-1-delta family.
   
 0.852
RPL5_2
60s ribosomal protein l5.
   
 0.826
RPS23_0
40s ribosomal protein s23; Belongs to the universal ribosomal protein uS12 family.
  
 0.773
PEL1
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.
    
 
 0.762
LOS1_1
Elongation factor 2.
  
 0.760
RPP1A_0
60s acidic ribosomal protein p1; Belongs to the eukaryotic ribosomal protein P1/P2 family.
   
 0.749
RPP1A_1
60s acidic ribosomal protein p1; Belongs to the eukaryotic ribosomal protein P1/P2 family.
   
 0.749
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.