A4A49_10707 protein (Nicotiana attenuata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A4A49_10707

Putative receptor-like serinethreonine-protein kinase. (520 aa)

Predicted Functional Partners:

PDR3

0.595

XLT2_4

0.523

WAG1

0.473

A4A49_06151

0.462

A4A49_21099

0.462

A4A49_00697

0.462

A4A49_15110

0.461

A4A49_34859

0.461

EXPA1_1

0.449

XTH30_1

0.445

Your Current Organism:

Nicotiana attenuata

NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A4A49_00697	A4A49_10707	A0A314L6E8	A0A314KQ20	Uncharacterized protein, chloroplastic.	Putative receptor-like serinethreonine-protein kinase.	0.462
A4A49_00697	A4A49_15110	A0A314L6E8	A0A1J6HT78	Uncharacterized protein, chloroplastic.	Mannose-p-dolichol utilization defect 1 protein-like 2.	0.530
A4A49_00697	A4A49_21099	A0A314L6E8	A0A314L3F4	Uncharacterized protein, chloroplastic.	Uncharacterized protein.	0.565
A4A49_00697	A4A49_34859	A0A314L6E8	A0A1J6JAI3	Uncharacterized protein, chloroplastic.	Mannose-p-dolichol utilization defect 1 protein-like 2.	0.530
A4A49_06151	A4A49_10707	A0A1J6IQS7	A0A314KQ20	Uncharacterized protein, chloroplastic.	Putative receptor-like serinethreonine-protein kinase.	0.462
A4A49_06151	A4A49_15110	A0A1J6IQS7	A0A1J6HT78	Uncharacterized protein, chloroplastic.	Mannose-p-dolichol utilization defect 1 protein-like 2.	0.530
A4A49_06151	A4A49_21099	A0A1J6IQS7	A0A314L3F4	Uncharacterized protein, chloroplastic.	Uncharacterized protein.	0.565
A4A49_06151	A4A49_34859	A0A1J6IQS7	A0A1J6JAI3	Uncharacterized protein, chloroplastic.	Mannose-p-dolichol utilization defect 1 protein-like 2.	0.530
A4A49_10707	A4A49_00697	A0A314KQ20	A0A314L6E8	Putative receptor-like serinethreonine-protein kinase.	Uncharacterized protein, chloroplastic.	0.462
A4A49_10707	A4A49_06151	A0A314KQ20	A0A1J6IQS7	Putative receptor-like serinethreonine-protein kinase.	Uncharacterized protein, chloroplastic.	0.462
A4A49_10707	A4A49_15110	A0A314KQ20	A0A1J6HT78	Putative receptor-like serinethreonine-protein kinase.	Mannose-p-dolichol utilization defect 1 protein-like 2.	0.461
A4A49_10707	A4A49_21099	A0A314KQ20	A0A314L3F4	Putative receptor-like serinethreonine-protein kinase.	Uncharacterized protein.	0.462
A4A49_10707	A4A49_34859	A0A314KQ20	A0A1J6JAI3	Putative receptor-like serinethreonine-protein kinase.	Mannose-p-dolichol utilization defect 1 protein-like 2.	0.461
A4A49_10707	EXPA1_1	A0A314KQ20	A0A1J6IYX7	Putative receptor-like serinethreonine-protein kinase.	Expansin; Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. Belongs to the expansin family. Expansin A subfamily.	0.449
A4A49_10707	PDR3	A0A314KQ20	A0A1J6I0J2	Putative receptor-like serinethreonine-protein kinase.	Pleiotropic drug resistance protein 3; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily.	0.595
A4A49_10707	WAG1	A0A314KQ20	A0A1J6JS73	Putative receptor-like serinethreonine-protein kinase.	Serinethreonine-protein kinase wag1.	0.473
A4A49_10707	XLT2_4	A0A314KQ20	A0A1J6KLS0	Putative receptor-like serinethreonine-protein kinase.	Xyloglucan galactosyltransferase xlt2; Belongs to the glycosyltransferase 47 family.	0.523
A4A49_10707	XTH30_1	A0A314KQ20	A0A1J6JQ91	Putative receptor-like serinethreonine-protein kinase.	Putative xyloglucan endotransglucosylasehydrolase protein 30.	0.445
A4A49_15110	A4A49_00697	A0A1J6HT78	A0A314L6E8	Mannose-p-dolichol utilization defect 1 protein-like 2.	Uncharacterized protein, chloroplastic.	0.530
A4A49_15110	A4A49_06151	A0A1J6HT78	A0A1J6IQS7	Mannose-p-dolichol utilization defect 1 protein-like 2.	Uncharacterized protein, chloroplastic.	0.530