Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CIPK3_1Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (438 aa)    
Predicted Functional Partners:
A4A49_10000
Protein phosphatase 2c and cyclic nucleotide-bindingkinase domain-containing protein.
   
  0.690
DSP4
Phosphoglucan phosphatase dsp4, amyloplastic.
    
 0.680
LSF1
Phosphoglucan phosphatase lsf1, chloroplastic.
    
 0.680
CBL1_0
Calcineurin b-like protein 1.
    
 0.663
CBL1_1
Calcineurin b-like protein 1.
    
 0.663
CBL3_1
Calcineurin b-like protein 3.
    
 0.584
CBL3_0
Calcineurin b-like protein 3.
    
 0.584
RBOHE_0
Respiratory burst oxidase-like protein e.
    
 
 0.564
RBOHE_2
Respiratory burst oxidase-like protein e.
    
 
 0.564
RBOHE_1
Respiratory burst oxidase-like protein e.
    
 
 0.564
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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