STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFC2_3Serinethreonine-protein kinase afc2. (1191 aa)    
Predicted Functional Partners:
LWD1
Wd repeat-containing protein lwd1.
   
 
 0.778
TTG1
Protein transparent testa glabra 1.
   
 
 0.778
ATM_0
Serinethreonine-protein kinase atm.
    
 0.601
A4A49_10000
Protein phosphatase 2c and cyclic nucleotide-bindingkinase domain-containing protein.
   
 
 0.591
PIN1_3
Peptidyl-prolyl cis-trans isomerase.
    
 0.524
PIN1_1
Peptidyl-prolyl cis-trans isomerase.
    
 0.524
SUMO1_1
Small ubiquitin-related modifier.
    
 0.502
A4A49_25820
Uncharacterized protein.
    
 0.502
SUMO1_0
Small ubiquitin-related modifier.
    
 0.502
SUMO2
Small ubiquitin-related modifier 2.
    
 0.502
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.