STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ULP1D_0Ubiquitin-like-specific protease 1d. (470 aa)    
Predicted Functional Partners:
SUMO1_1
Small ubiquitin-related modifier.
    
 0.784
A4A49_25820
Uncharacterized protein.
    
 0.784
SUMO1_0
Small ubiquitin-related modifier.
    
 0.784
SUMO2
Small ubiquitin-related modifier 2.
    
 0.784
SAE2
SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.
    
 
 0.567
A4A49_02061
Reverse transcriptase domain-containing protein.
    
 0.500
A4A49_38057
Uncharacterized protein.
   
 0.480
SAE1B-2
Sumo-activating enzyme subunit 1b-2.
    
 
 0.464
MMS21
E3 sumo-protein ligase mms21.
    
 
 0.447
HSD5_1
11-beta-hydroxysteroid dehydrogenase-like 5; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 
 0.447
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.