HSR4_7 protein (Nicotiana attenuata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HSR4_7

Protein hyper-sensitivity-related 4; Belongs to the AAA ATPase family. (497 aa)

Predicted Functional Partners:

A4A49_10006

0.568

NSF_0

0.546

NSF_1

0.545

A4A49_23058

0.540

AAA1_5

0.522

RPS14

0.520

RPL36

0.515

FTSHI1_0

0.514

AAA1_6

0.513

AAA1_16

0.508

Your Current Organism:

Nicotiana attenuata

NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A4A49_10006	FTSHI1_0	A0A314L240	A0A1J6IVF6	Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.	Putative inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic.	0.568
A4A49_10006	HSR4_7	A0A314L240	A0A314KYX4	Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.	Protein hyper-sensitivity-related 4; Belongs to the AAA ATPase family.	0.568
A4A49_23058	FTSHI1_0	A0A314KGQ9	A0A1J6IVF6	Uncharacterized protein.	Putative inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic.	0.563
A4A49_23058	HSR4_7	A0A314KGQ9	A0A314KYX4	Uncharacterized protein.	Protein hyper-sensitivity-related 4; Belongs to the AAA ATPase family.	0.540
A4A49_23058	RPL36	A0A314KGQ9	A0A1J6IGK7	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.988
A4A49_23058	RPS14	A0A314KGQ9	A0A1J6J305	Uncharacterized protein.	Ribosomal protein s14, mitochondrial.	0.998
AAA1_16	FTSHI1_0	A0A314KYH8	A0A1J6IVF6	Katanin p60 atpase-containing subunit a1; Belongs to the AAA ATPase family.	Putative inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic.	0.495
AAA1_16	HSR4_7	A0A314KYH8	A0A314KYX4	Katanin p60 atpase-containing subunit a1; Belongs to the AAA ATPase family.	Protein hyper-sensitivity-related 4; Belongs to the AAA ATPase family.	0.508
AAA1_16	NSF_0	A0A314KYH8	A0A314L3M7	Katanin p60 atpase-containing subunit a1; Belongs to the AAA ATPase family.	Vesicle-fusing atpase; Belongs to the AAA ATPase family.	0.522
AAA1_16	NSF_1	A0A314KYH8	A0A1J6KKM1	Katanin p60 atpase-containing subunit a1; Belongs to the AAA ATPase family.	Vesicle-fusing atpase.	0.510
AAA1_5	FTSHI1_0	A0A1J6L5T5	A0A1J6IVF6	Katanin p60 atpase-containing subunit a1; Belongs to the AAA ATPase family.	Putative inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic.	0.508
AAA1_5	HSR4_7	A0A1J6L5T5	A0A314KYX4	Katanin p60 atpase-containing subunit a1; Belongs to the AAA ATPase family.	Protein hyper-sensitivity-related 4; Belongs to the AAA ATPase family.	0.522
AAA1_5	NSF_0	A0A1J6L5T5	A0A314L3M7	Katanin p60 atpase-containing subunit a1; Belongs to the AAA ATPase family.	Vesicle-fusing atpase; Belongs to the AAA ATPase family.	0.526
AAA1_5	NSF_1	A0A1J6L5T5	A0A1J6KKM1	Katanin p60 atpase-containing subunit a1; Belongs to the AAA ATPase family.	Vesicle-fusing atpase.	0.519
AAA1_6	FTSHI1_0	A0A1J6IWV0	A0A1J6IVF6	Katanin p60 atpase-containing subunit a1; Belongs to the AAA ATPase family.	Putative inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic.	0.496
AAA1_6	HSR4_7	A0A1J6IWV0	A0A314KYX4	Katanin p60 atpase-containing subunit a1; Belongs to the AAA ATPase family.	Protein hyper-sensitivity-related 4; Belongs to the AAA ATPase family.	0.513
AAA1_6	NSF_1	A0A1J6IWV0	A0A1J6KKM1	Katanin p60 atpase-containing subunit a1; Belongs to the AAA ATPase family.	Vesicle-fusing atpase.	0.513
FTSHI1_0	A4A49_10006	A0A1J6IVF6	A0A314L240	Putative inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic.	Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.	0.568
FTSHI1_0	A4A49_23058	A0A1J6IVF6	A0A314KGQ9	Putative inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic.	Uncharacterized protein.	0.563
FTSHI1_0	AAA1_16	A0A1J6IVF6	A0A314KYH8	Putative inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic.	Katanin p60 atpase-containing subunit a1; Belongs to the AAA ATPase family.	0.495