A4A49_17948 protein (Nicotiana attenuata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A4A49_17948

RNase H domain-containing protein. (368 aa)

Predicted Functional Partners:

APC5

0.963

APC6

0.962

APC4

0.962

APC10

0.962

APC1

0.962

APC2

0.961

MAD2

0.952

APC7

0.951

UBC22

0.946

A4A49_19097

0.908

Your Current Organism:

Nicotiana attenuata

NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A4A49_17948	A4A49_19097	A0A314L4I8	A0A1J6II72	RNase H domain-containing protein.	GLTSCR1 domain-containing protein.	0.908
A4A49_17948	APC1	A0A314L4I8	A0A314LAF1	RNase H domain-containing protein.	Anaphase-promoting complex subunit 1.	0.962
A4A49_17948	APC10	A0A314L4I8	A0A1J6KBP2	RNase H domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.962
A4A49_17948	APC2	A0A314L4I8	A0A314KVF5	RNase H domain-containing protein.	Anaphase-promoting complex subunit 2; Belongs to the cullin family.	0.961
A4A49_17948	APC4	A0A314L4I8	A0A1J6JF33	RNase H domain-containing protein.	Anaphase-promoting complex subunit 4.	0.962
A4A49_17948	APC5	A0A314L4I8	A0A314L611	RNase H domain-containing protein.	Anaphase-promoting complex subunit 5.	0.963
A4A49_17948	APC6	A0A314L4I8	A0A1J6IA86	RNase H domain-containing protein.	Anaphase-promoting complex subunit 6.	0.962
A4A49_17948	APC7	A0A314L4I8	A0A1J6I2S6	RNase H domain-containing protein.	Anaphase-promoting complex subunit 7.	0.951
A4A49_17948	MAD2	A0A314L4I8	A0A314L7R4	RNase H domain-containing protein.	Mitotic spindle checkpoint protein mad2.	0.952
A4A49_17948	UBC22	A0A314L4I8	A0A314KSJ2	RNase H domain-containing protein.	Ubiquitin-conjugating enzyme e2 22; Belongs to the ubiquitin-conjugating enzyme family.	0.946
A4A49_19097	A4A49_17948	A0A1J6II72	A0A314L4I8	GLTSCR1 domain-containing protein.	RNase H domain-containing protein.	0.908
A4A49_19097	APC1	A0A1J6II72	A0A314LAF1	GLTSCR1 domain-containing protein.	Anaphase-promoting complex subunit 1.	0.989
A4A49_19097	APC10	A0A1J6II72	A0A1J6KBP2	GLTSCR1 domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.989
A4A49_19097	APC2	A0A1J6II72	A0A314KVF5	GLTSCR1 domain-containing protein.	Anaphase-promoting complex subunit 2; Belongs to the cullin family.	0.989
A4A49_19097	APC4	A0A1J6II72	A0A1J6JF33	GLTSCR1 domain-containing protein.	Anaphase-promoting complex subunit 4.	0.990
A4A49_19097	APC5	A0A1J6II72	A0A314L611	GLTSCR1 domain-containing protein.	Anaphase-promoting complex subunit 5.	0.990
A4A49_19097	APC6	A0A1J6II72	A0A1J6IA86	GLTSCR1 domain-containing protein.	Anaphase-promoting complex subunit 6.	0.991
A4A49_19097	APC7	A0A1J6II72	A0A1J6I2S6	GLTSCR1 domain-containing protein.	Anaphase-promoting complex subunit 7.	0.982
A4A49_19097	MAD2	A0A1J6II72	A0A314L7R4	GLTSCR1 domain-containing protein.	Mitotic spindle checkpoint protein mad2.	0.977
A4A49_19097	UBC22	A0A1J6II72	A0A314KSJ2	GLTSCR1 domain-containing protein.	Ubiquitin-conjugating enzyme e2 22; Belongs to the ubiquitin-conjugating enzyme family.	0.965