STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEGP10Protease do-like 10, mitochondrial. (593 aa)    
Predicted Functional Partners:
PEX5
Peroxisome biogenesis protein 5.
    
 0.583
RPN13
26s proteasome regulatory subunit rpn13.
   
 0.583
RPN7
26s proteasome non-atpase regulatory subunit 6-like protein.
    
 0.573
RPN5A_0
26s proteasome non-atpase regulatory subunit 12-like a.
    
 0.560
RPN5A_1
26s proteasome non-atpase regulatory subunit 12-like a.
    
 0.560
RPN1A_1
26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
 0.541
RPN1A_0
26S proteasome non-ATPase regulatory subunit 2 homolog; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
 0.541
PEX10
Peroxisome biogenesis factor 10.
     
 0.537
RPN10_1
26s proteasome non-atpase regulatory subunit 4-like protein.
   
 0.525
RPN10_0
26s proteasome non-atpase regulatory subunit 4-like protein.
   
 0.525
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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