STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PUB1_2Putative ubiquitin conjugation factor e4. (1040 aa)    
Predicted Functional Partners:
A4A49_25626
OTU domain-containing protein.
    
 
 0.977
UPL3_1
E3 ubiquitin-protein ligase upl3.
   
 0.960
UPL4
E3 ubiquitin-protein ligase upl4.
   
 0.960
UPL3_0
E3 ubiquitin-protein ligase upl3.
   
 0.960
A4A49_42198
Uncharacterized protein.
    
 
 0.939
A4A49_04259
Npl4-like protein 1.
    
 
 0.939
DSK2B_0
Ubiquitin domain-containing protein dsk2b.
   
 0.934
DSK2B_2
Ubiquitin domain-containing protein dsk2b.
   
 0.934
DSK2B_1
Ubiquitin domain-containing protein dsk2b.
   
 0.934
A4A49_19170
Uncharacterized protein.
    
 
 0.919
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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