Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL4_1Zinc finger protein constans-like 4. (342 aa)    
Predicted Functional Partners:
MIP1B
B-box domain protein 31.
      
 0.564
A4A49_10270
Uncharacterized protein.
      
 0.563
HOS1
E3 ubiquitin-protein ligase hos1.
    
   0.500
ADO3
Adagio protein 3.
    
 
 0.480
PHYB1
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.
    
 
 0.473
COP1_0
E3 ubiquitin-protein ligase cop1.
   
 
 0.459
COP1_1
E3 ubiquitin-protein ligase cop1.
   
 
 0.459
COP1_2
E3 ubiquitin-protein ligase cop1.
   
 
 0.459
COP1_4
E3 ubiquitin-protein ligase cop1.
   
 
 0.459
GI_1
Protein gigantea.
    
 
 0.432
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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