STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDKC-2_1Cyclin-dependent kinase c-2. (509 aa)    
Predicted Functional Partners:
CYCT1-1_1
Cyclin-t1-4; Belongs to the cyclin family.
    
 0.766
CYCT1-5
Cyclin-t1-5.
    
 0.676
CYCT1-1_2
Cyclin-t1-4.
    
 0.676
CYCT1-1_0
Cyclin-t1-4; Belongs to the cyclin family.
    
 0.676
A4A49_26550
Transcription elongation factor spt4-like 2.
    
 0.634
CYCH1-1
Cyclin-h1-1; Belongs to the cyclin family.
    
 0.626
SSRP1
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
     
 0.559
CDKD-1_1
Cyclin-dependent kinase d-1; Belongs to the protein kinase superfamily.
  
 
0.550
HULK3
Protein hua2-like 3.
    
 
 0.526
HUA2
Enhancer of ag-4 protein 2.
    
 
 0.526
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.