Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MADS6Mads-box transcription factor 6. (250 aa)    
Predicted Functional Partners:
TDR5
Agamous-like mads-box protein agl9.
   
   0.779
STN8
Serinethreonine-protein kinase stn8, chloroplastic; Belongs to the protein kinase superfamily.
    
 
 0.630
HD3A_0
Protein heading date 3a.
      
 0.610
AP1C
Floral homeotic protein apetala 1 c.
   
 
 0.585
AGL8_0
Agamous-like mads-box protein agl8.
   
 
 0.585
AGL8_2
Agamous-like mads-box protein agl8.
   
 
 0.585
AGL8_3
Agamous-like mads-box protein agl8.
   
 
 0.585
AGL8_1
Agamous-like mads-box protein agl8.
   
 
 0.585
FDP_0
Bzip transcription factor 27.
   
  
 0.573
PR-1_2
Pathogenesis-related protein pr-1; Belongs to the CRISP family.
      
 0.570
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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