STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A4A49_32127Quinone oxidoreductase-like protein, chloroplastic. (325 aa)    
Predicted Functional Partners:
MAP2B
Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
      
 0.667
RING1_4
E3 ubiquitin-protein ligase ring1.
      
 0.513
HPPD
4-hydroxyphenylpyruvate dioxygenase.
     
 0.499
MSH7
Dna mismatch repair protein msh7.
  
  
 0.471
ALDH2C4
Aldehyde dehydrogenase family 2 member c4; Belongs to the aldehyde dehydrogenase family.
   
 0.426
CHS2_2
Chalcone synthase 2; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
  
 0.405
CHS
Chalcone synthase; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
  
 0.405
PKSA
Type iii polyketide synthase a; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
  
 0.405
PKSB
Type iii polyketide synthase b; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
  
 0.405
CHS2_0
Chalcone synthase 2; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
  
 0.405
Your Current Organism:
Nicotiana attenuata
NCBI taxonomy Id: 49451
Other names: N. attenuata, Nicotiana attenuata Torr. ex S.Watson
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