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RAT1 protein (Yarrowia lipolytica) - STRING interaction network
"RAT1" - YALI0D13750p in Yarrowia lipolytica
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAT1YALI0D13750p; Possesses 5’->3’ exoribonuclease activity. Required for the processing of nuclear mRNA and rRNA precursors. May promote termination of transcription by RNA polymerase II (By similarity) (1010 aa)    
Predicted Functional Partners:
RAI1
YALI0E28490p; Ribonuclease that specifically degrades pre-mRNAs with a defective 5’ end cap and is part of a pre-mRNA capping quality control. Has decapping and pyrophosphohydrolase activities. Has decapping activity toward incomplete 5’ end cap mRNAs such as unmethylated 5’ end-capped RNA to release GpppN and 5’ end monophosphate RNA. Also possesses RNA 5’-pyrophosphohydrolase activity by hydrolyzing the 5’ end triphosphate to release pyrophosphates (By similarity) (349 aa)
     
 
  0.979
XP_505466.1
YALI0F15719p (212 aa)
     
  0.963
XP_504149.1
YALI0E19514p (849 aa)
       
  0.919
XP_501788.1
YALI0C13310p (1010 aa)
     
  0.893
XP_502167.1
YALI0C23144p; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5’-3’ exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins (1526 aa)
       
0.867
XP_504719.1
YALI0E33231p (421 aa)
     
 
  0.855
XP_503507.1
YALI0E03630p (986 aa)
     
  0.827
XP_505385.1
YALI0F13717p (1212 aa)
     
  0.805
XP_500256.1
YALI0A19756p (131 aa)
       
  0.800
NOP58
YALI0B00946p; Required for pre-18S rRNA processing. May bind microtubules (By similarity) (515 aa)
     
  0.799
Your Current Organism:
Yarrowia lipolytica
NCBI taxonomy Id: 4952
Other names: Candida lipolytica, Dipodascaceae, Mycotorula lipolytica, Y. lipolytica, Yarrowia, Yarrowia lipolytica
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