STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAFE_0A05666GLAFE_0A05666g1_1. (287 aa)    
Predicted Functional Partners:
LAFE_0G09032G
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
   
    0.761
LAFE_0A05138G
LAFE_0A05138g1_1.
   
    0.719
LAFE_0H12068G
LAFE_0H12068g1_1; Belongs to the DEAD box helicase family.
   
  
 0.618
LAFE_0C05842G
LAFE_0C05842g1_1.
   
  
 0.609
LAFE_0E00650G
LAFE_0E00650g1_1.
   
    0.554
LAFE_0H12574G
LAFE_0H12574g1_1.
   
  
 0.554
LAFE_0F06348G
LAFE_0F06348g1_1.
   
    0.552
LAFE_0H10374G
LAFE_0H10374g1_1.
   
    0.548
LAFE_0F01486G
LAFE_0F01486g1_1.
   
   0.531
LAFE_0F03180G
LAFE_0F03180g1_1.
   
    0.526
Your Current Organism:
Lachancea fermentati
NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.