STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAFE_0B01354GLAFE_0B01354g1_1; Belongs to the class-I aminoacyl-tRNA synthetase family. (1072 aa)    
Predicted Functional Partners:
LAFE_0G08438G
LAFE_0G08438g1_1.
  
 0.982
LAFE_0F17810G
LAFE_0F17810g1_1; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.976
LAFE_0F10682G
LAFE_0F10682g1_1.
   
 0.969
LAFE_0E13960G
LAFE_0E13960g1_1; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.960
LAFE_0E01596G
LAFE_0E01596g1_1; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.952
LAFE_0E04764G
Lysine--tRNA ligase.
  
 0.932
LAFE_0C06172G
LAFE_0C06172g1_1.
  
 0.900
LAFE_0D07888G
LAFE_0D07888g1_1; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.891
LAFE_0B02036G
LAFE_0B02036g1_1.
   
 0.889
LAFE_0H12794G
LAFE_0H12794g1_1.
   
 0.885
Your Current Organism:
Lachancea fermentati
NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.