STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAFE_0B12178GLAFE_0B12178g1_1; Belongs to the carnitine/choline acetyltransferase family. (686 aa)    
Predicted Functional Partners:
LAFE_0G17502G
LAFE_0G17502g1_1.
  
0.874
LAFE_0G15456G
LAFE_0G15456g1_1.
     
 0.863
LAFE_0F15390G
LAFE_0F15390g1_1; Belongs to the carnitine/choline acetyltransferase family.
  
0.841
LAFE_0E13322G
LAFE_0E13322g1_1; Belongs to the mitochondrial carrier (TC 2.A.29) family.
  
  
 0.802
LAFE_0H14158G
LAFE_0H14158g1_1.
   
 
 0.747
LAFE_0F16578G
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 0.642
LAFE_0H03730G
LAFE_0H03730g1_1.
   
 0.642
LAFE_0B11628G
LAFE_0B11628g1_1.
   
 0.637
LAFE_0B04918G
Isocitrate lyase.
   
  
 0.622
LAFE_0F10308G
Citrate synthase; Belongs to the citrate synthase family.
   
 
 0.501
Your Current Organism:
Lachancea fermentati
NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.