STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAFE_0C02938GLAFE_0C02938g1_1. (78 aa)    
Predicted Functional Partners:
LAFE_0C09098G
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.942
LAFE_0E01376G
Histone H2A; Belongs to the histone H2A family.
   
 0.871
LAFE_0C09406G
Histone H2B; Belongs to the histone H2B family.
   
 0.808
LAFE_0H05314G
Histone H2B; Belongs to the histone H2B family.
   
 0.808
LAFE_0H06480G
LAFE_0H06480g1_1.
   
 0.807
LAFE_0D05182G
LAFE_0D05182g1_1.
   
 0.785
LAFE_0F16622G
LAFE_0F16622g1_1.
   
 
 0.769
LAFE_0C09120G
Histone H3; Belongs to the histone H3 family.
   
 0.763
LAFE_0F07008G
LAFE_0F07008g1_1.
   
 0.763
LAFE_0F15698G
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.760
Your Current Organism:
Lachancea fermentati
NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.