STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAFE_0D04126GLAFE_0D04126g1_1. (757 aa)    
Predicted Functional Partners:
LAFE_0C00386G
LAFE_0C00386g1_1.
    
 
 0.651
LAFE_0B02784G
LAFE_0B02784g1_1; Belongs to the DEAD box helicase family.
    
 
 0.638
LAFE_0F12486G
LAFE_0F12486g1_1; Belongs to the RNR ribonuclease family.
   
   0.532
LAFE_0D11012G
LAFE_0D11012g1_1.
    
 
 0.509
LAFE_0E02520G
LAFE_0E02520g1_1.
    
 
 0.425
Your Current Organism:
Lachancea fermentati
NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.