STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAFE_0D08702GLAFE_0D08702g1_1. (507 aa)    
Predicted Functional Partners:
LAFE_0G03620G
LAFE_0G03620g1_1.
   
 0.961
LAFE_0D04566G
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.945
LAFE_0C02718G
LAFE_0C02718g1_1.
   
 0.919
LAFE_0E11650G
LAFE_0E11650g1_1.
    
 0.897
LAFE_0B11320G
LAFE_0B11320g1_1.
    
 
 0.890
LAFE_0D09054G
LAFE_0D09054g1_1.
   
 0.862
LAFE_0G18822G
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.859
LAFE_0C03708G
LAFE_0C03708g1_1.
   
 0.820
LAFE_0C11496G
LAFE_0C11496g1_1.
   
 0.820
LAFE_0H07756G
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.814
Your Current Organism:
Lachancea fermentati
NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.