STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAFE_0D10484GLAFE_0D10484g1_1. (578 aa)    
Predicted Functional Partners:
LAFE_0H05578G
LAFE_0H05578g1_1.
    
 0.835
LAFE_0G15456G
LAFE_0G15456g1_1.
    
 0.515
LAFE_0H02740G
LAFE_0H02740g1_1.
    
 0.503
LAFE_0B06502G
LAFE_0B06502g1_1.
   
  0.491
LAFE_0F04324G
Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.
    
 0.488
LAFE_0D11254G
LAFE_0D11254g1_1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.461
LAFE_0E10242G
LAFE_0E10242g1_1.
    
  0.446
LAFE_0F06414G
LAFE_0F06414g1_1.
    
  0.430
LAFE_0C03532G
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
  0.424
LAFE_0G06700G
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
   
 0.418
Your Current Organism:
Lachancea fermentati
NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.