STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAFE_0E04346GLAFE_0E04346g1_1. (905 aa)    
Predicted Functional Partners:
LAFE_0B03818G
LAFE_0B03818g1_1.
   
 0.999
LAFE_0D09472G
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.999
LAFE_0G04390G
LAFE_0G04390g1_1.
   
 0.999
LAFE_0H01046G
LAFE_0H01046g1_1.
   
 0.999
LAFE_0H04654G
LAFE_0H04654g1_1; Belongs to the DEAD box helicase family.
   
 0.998
LAFE_0H07294G
Small nuclear ribonucleoprotein Sm D3.
   
 0.997
LAFE_0H10000G
LAFE_0H10000g1_1.
   
 0.997
LAFE_0A03488G
LAFE_0A03488g1_1.
   
 0.995
LAFE_0E08856G
LAFE_0E08856g1_1.
   
 0.995
LAFE_0F15566G
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.994
Your Current Organism:
Lachancea fermentati
NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.