STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAFE_0E06458GLAFE_0E06458g1_1. (322 aa)    
Predicted Functional Partners:
LAFE_0G00386G
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.993
LAFE_0B02960G
LAFE_0B02960g1_1.
   
 0.992
LAFE_0F04918G
LAFE_0F04918g1_1.
   
 0.992
LAFE_0E10814G
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
   
 0.991
LAFE_0C00342G
LAFE_0C00342g1_1.
   
 
 0.989
LAFE_0F14136G
LAFE_0F14136g1_1.
   
 0.985
LAFE_0F08680G
LAFE_0F08680g1_1.
   
 0.983
LAFE_0G01354G
LAFE_0G01354g1_1.
   
 
 0.983
LAFE_0E08790G
U3 small nucleolar RNA-associated protein 22.
   
 0.978
LAFE_0A05314G
RNA helicase.
   
 0.976
Your Current Organism:
Lachancea fermentati
NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.