STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAFE_0E13498GLAFE_0E13498g1_1. (401 aa)    
Predicted Functional Partners:
LAFE_0G08768G
LAFE_0G08768g1_1.
    
 
 0.704
LAFE_0F08460G
LAFE_0F08460g1_1; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.638
LAFE_0H15412G
LAFE_0H15412g1_1; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 
 0.630
LAFE_0B08218G
LAFE_0B08218g1_1.
   
   0.589
LAFE_0A02828G
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.565
LAFE_0D07668G
LAFE_0D07668g1_1.
   
 
 0.556
LAFE_0C12332G
LAFE_0C12332g1_1; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.537
LAFE_0F15720G
LAFE_0F15720g1_1; Belongs to the universal ribosomal protein uL13 family.
  
   0.532
LAFE_0E02696G
LAFE_0E02696g1_1.
  
   0.531
LAFE_0H15720G
LAFE_0H15720g1_1.
   
 
 0.531
Your Current Organism:
Lachancea fermentati
NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati
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