STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAFE_0F05490GProtoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (532 aa)    
Predicted Functional Partners:
LAFE_0E04962G
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
 
 0.982
LAFE_0C08306G
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
 
 0.976
LAFE_0E04632G
LAFE_0E04632g1_1.
  
 
 0.896
LAFE_0H16226G
LAFE_0H16226g1_1.
    
  0.811
LAFE_0G06854G
LAFE_0G06854g1_1.
    
 0.791
LAFE_0E06172G
LAFE_0E06172g1_1.
  
 
 0.742
LAFE_0H15280G
LAFE_0H15280g1_1.
  
 
 0.721
LAFE_0D01882G
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
  
  
 0.709
LAFE_0H04896G
LAFE_0H04896g1_1.
  
  
 0.703
LAFE_0H04962G
5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
     
 0.618
Your Current Organism:
Lachancea fermentati
NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.