STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAFE_0F12024GNuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (744 aa)    
Predicted Functional Partners:
LAFE_0A04896G
LAFE_0A04896g1_1.
   
 0.999
LAFE_0B02740G
LAFE_0B02740g1_1; Belongs to the WD repeat SEC13 family.
    
 0.999
LAFE_0B08504G
LAFE_0B08504g1_1.
   
 0.999
LAFE_0C06040G
LAFE_0C06040g1_1; Belongs to the WD repeat SEC13 family.
   
 0.999
LAFE_0E10088G
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.999
LAFE_0F01464G
LAFE_0F01464g1_1.
   
 0.999
LAFE_0B01288G
LAFE_0B01288g1_1.
   
 0.998
LAFE_0B07206G
Nuclear pore protein.
   
 0.998
LAFE_0A04874G
LAFE_0A04874g1_1.
   
 0.995
LAFE_0F07228G
LAFE_0F07228g1_1.
    
 0.995
Your Current Organism:
Lachancea fermentati
NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.