STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAFE_0G14532GProtein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family. (2396 aa)    
Predicted Functional Partners:
LAFE_0B02740G
LAFE_0B02740g1_1; Belongs to the WD repeat SEC13 family.
    
 0.996
LAFE_0E11540G
LAFE_0E11540g1_1.
   
 0.970
LAFE_0D08086G
LAFE_0D08086g1_1.
   
 0.964
LAFE_0F12596G
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.922
LAFE_0H17348G
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.922
LAFE_0B03422G
LAFE_0B03422g1_1.
   
 0.914
LAFE_0C04126G
LAFE_0C04126g1_1; Belongs to the small GTPase superfamily. SAR1 family.
    
 0.896
LAFE_0C10132G
LAFE_0C10132g1_1; Belongs to the syntaxin family.
   
 
 0.770
LAFE_0C08416G
LAFE_0C08416g1_1; Belongs to the synaptobrevin family.
     
 0.754
LAFE_0C01530G
LAFE_0C01530g1_1.
   
 
 0.691
Your Current Organism:
Lachancea fermentati
NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati
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