STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAFE_0G18866GLAFE_0G18866g1_1. (482 aa)    
Predicted Functional Partners:
LAFE_0C13498G
LAFE_0C13498g1_1.
   
 
 0.785
LAFE_0B02960G
LAFE_0B02960g1_1.
   
   0.776
LAFE_0H05358G
LAFE_0H05358g1_1.
   
 
 0.764
LAFE_0G18118G
LAFE_0G18118g1_1.
   
   0.744
LAFE_0B12420G
LAFE_0B12420g1_1.
   
 
 0.732
LAFE_0C04346G
60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 
 0.730
LAFE_0F08394G
LAFE_0F08394g1_1.
   
    0.724
LAFE_0D11144G
Protein MAK16; Belongs to the MAK16 family.
   
 
 0.723
LAFE_0F12002G
LAFE_0F12002g1_1.
   
 
 0.713
LAFE_0C01024G
LAFE_0C01024g1_1; Belongs to the DEAD box helicase family.
   
 0.703
Your Current Organism:
Lachancea fermentati
NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.