STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAFE_0G18976GLAFE_0G18976g1_1. (193 aa)    
Predicted Functional Partners:
LAFE_0F06062G
LAFE_0F06062g1_1.
    
 0.999
LAFE_0B02784G
LAFE_0B02784g1_1; Belongs to the DEAD box helicase family.
   
 0.998
LAFE_0D03906G
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
    
 0.998
LAFE_0F11496G
LAFE_0F11496g1_1.
   
 0.985
LAFE_0C01134G
LAFE_0C01134g1_1.
    
 0.947
LAFE_0H03092G
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.
   
 0.924
LAFE_0F05138G
LAFE_0F05138g1_1.
    
 
 0.906
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.863
LSM1
U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.
    
 0.860
LAFE_0G16512G
LAFE_0G16512g1_1.
    
 
 0.823
Your Current Organism:
Lachancea fermentati
NCBI taxonomy Id: 4955
Other names: ATCC 58446, CBS 707, CCRC 21760, CCRC:21760, CECT 11056, DBVPG 6297, IFO 0479, L. fermentati, Zygosaccharomyces fermentati
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